Package index • westcoastdata

All functions

clean_ca_rec_otolith(): Format otolith data
clean_ccfrp(): Clean and standardize CCFRP data
clean_ccfrp_otolith(): Format otolith data
clean_cdfw_otolith_files(): Format otolith data
clean_gcdc_data(): Clean and standardize CCFRP data
clean_nwfsc_hkl(): Function to remove all unneeded species data and to format column names as needed for the NWFS HKL data.
clean_pacfin_comps(): Clean pulled PacFIN data
clean_recfin_ages(): Clean RecFIN data
clean_recfin_lengths(): Clean RecFIN length data
clean_wcgbt_bio(): Clean NWFSC WCGBTS biological data
clean_wcgbt_catch(): Clean NWFSC WCGBTS survey catch file
clean_wdfw_otolith_files(): Format otolith data
combine_all_data(): Combine all data into a data frame
combine_species(): Helper function to standardize species names
get_hkl_species(): List of species name to estimate indices for NWFSC HKL survey data
get_short_species_list(): List of select species to summarize commercial and recreational data for
get_source(): Clean up source names
get_species_data(): Define which data to plot/show based upon species
get_species_data_survey(): Define which data to plot/show based upon species
get_species_list(): List of species names to pull from NWFSC survey data
load_pacfin_data(): Function to load in a PacFIN Rdata file.
load_rdata_object(): Load rdata file
plot_data_by_year(): Plot all the data
plot_hkl_comps(): Plot NWFSC HKL data
plot_wcgbt_comps(): Plot NWFSC WCGBTS composition data
process_comps_unexpanded(): Creates a matrix of length or age composition data WITHOUT expansion
pull_wcgbts(): Wrapper function to pull all species catch and biological data from the NWFSC data wharehouse.
rename_wcgbt_species(): Clean NWFSC WCGBTS catch and biological data
summarize_survey_new_information(): Summarize new survey data available for a new assessment